.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "gallery/ms_matplotlib/plot_peakmap_binning_demonstration_ms_matplotlib.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_gallery_ms_matplotlib_plot_peakmap_binning_demonstration_ms_matplotlib.py>`
        to download the full example code. or to run this example in your browser via Binder

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_gallery_ms_matplotlib_plot_peakmap_binning_demonstration_ms_matplotlib.py:


Plot Peakmap Binning Demonstration
==================================

This example demonstrates how different binning levels affect peak map visualization

.. GENERATED FROM PYTHON SOURCE LINES 7-49



.. image-sg:: /gallery/ms_matplotlib/images/sphx_glr_plot_peakmap_binning_demonstration_ms_matplotlib_001.png
   :alt: Binning: 10 x 10, Binning: 40 x 40, Binning: 100 x 100
   :srcset: /gallery/ms_matplotlib/images/sphx_glr_plot_peakmap_binning_demonstration_ms_matplotlib_001.png
   :class: sphx-glr-single-img





.. code-block:: Python


    import pandas as pd
    import requests
    from io import StringIO
    import numpy as np
    import matplotlib.pyplot as plt

    pd.options.plotting.backend = "ms_matplotlib"

    url = "https://github.com/OpenMS/pyopenms_viz/releases/download/v0.1.5/TestMSExperimentDf.tsv"
    response = requests.get(url)
    response.raise_for_status()
    df = pd.read_csv(StringIO(response.text), sep="\t")


    fig, axs = plt.subplots(3, 1, figsize=(5, 15), sharex=True, sharey=True)


    binning_levels = [(10, 10), (40, 40), (100, 100)]

    for ax, (num_x_bins, num_y_bins) in zip(axs, binning_levels):
    
        df.plot(
            kind="peakmap",
            x="RT",
            y="mz",
            z="inty",
            aggregate_duplicates=True,
            num_x_bins=num_x_bins,
            num_y_bins=num_y_bins,
            canvas=ax,
            title=f"Binning: {num_x_bins} x {num_y_bins}",
            title_font_size=12,
            show_plot = False,
            xaxis_label_font_size=10,
            yaxis_label_font_size=10,
            xaxis_tick_font_size=9,
            yaxis_tick_font_size=9,
        )

    fig.subplots_adjust(top=0.95, hspace=0.3, bottom=0.13)
    plt.show()


.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.366 seconds)


.. _sphx_glr_download_gallery_ms_matplotlib_plot_peakmap_binning_demonstration_ms_matplotlib.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: binder-badge

      .. image:: images/binder_badge_logo.svg
        :target: https://notebooks.gesis.org/binder/v2/gh/OpenMS/pyopenms_viz/gh_pages?filepath=notebooks/gallery/ms_matplotlib/plot_peakmap_binning_demonstration_ms_matplotlib.ipynb
        :alt: Launch binder
        :width: 150 px

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_peakmap_binning_demonstration_ms_matplotlib.ipynb <plot_peakmap_binning_demonstration_ms_matplotlib.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_peakmap_binning_demonstration_ms_matplotlib.py <plot_peakmap_binning_demonstration_ms_matplotlib.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_peakmap_binning_demonstration_ms_matplotlib.zip <plot_peakmap_binning_demonstration_ms_matplotlib.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_