.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "gallery/ms_plotly/plot_chromatogram_ms_plotly.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_gallery_ms_plotly_plot_chromatogram_ms_plotly.py>`
        to download the full example code. or to run this example in your browser via Binder

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_gallery_ms_plotly_plot_chromatogram_ms_plotly.py:


Chromatogram ms_plotly
================

This example shows a chromatogram colored by mass trace. Since all fragment ion spectra coelute this provides strong evidence that the peptide is present.

.. GENERATED FROM PYTHON SOURCE LINES 7-28




.. rst-class:: sphx-glr-script-out

 .. code-block:: none

    /home/runner/work/pyopenms_viz/pyopenms_viz/pyopenms_viz/_core.py:576: UserWarning:

    Duplicate data detected, data will not be aggregated which may lead to unexpected plots. To enable aggregation set `aggregate_duplicates=True`.



.. raw:: html

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    </div>
    <br />
    <br />



|

.. code-block:: Python


    import pandas as pd
    import requests
    from io import StringIO

    pd.options.plotting.backend = "ms_plotly"


    # download the file for example plotting
    url = "https://github.com/OpenMS/pyopenms_viz/releases/download/v0.1.5/ionMobilityTestChromatogramDf.tsv"
    response = requests.get(url)
    response.raise_for_status()  # Check for any HTTP errors
    df = pd.read_csv(StringIO(response.text), sep="\t")

    df.plot(
        kind="chromatogram",
        x="rt",
        y="int",
        by="Annotation",
        legend_config=dict(bbox_to_anchor=(1, 0.7)),
    )


.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.120 seconds)


.. _sphx_glr_download_gallery_ms_plotly_plot_chromatogram_ms_plotly.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: binder-badge

      .. image:: images/binder_badge_logo.svg
        :target: https://notebooks.gesis.org/binder/v2/gh/OpenMS/pyopenms_viz/gh_pages?filepath=notebooks/gallery/ms_plotly/plot_chromatogram_ms_plotly.ipynb
        :alt: Launch binder
        :width: 150 px

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_chromatogram_ms_plotly.ipynb <plot_chromatogram_ms_plotly.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_chromatogram_ms_plotly.py <plot_chromatogram_ms_plotly.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_chromatogram_ms_plotly.zip <plot_chromatogram_ms_plotly.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_