BaseMSPlot#

class pyopenms_viz._core.BaseMSPlot(data: DataFrame, config: BasePlotConfig = None, **kwargs)#

Bases: BasePlot, ABC

Abstract class for complex plots, such as chromatograms and mobilograms which are made up of simple plots such as ScatterPlots, VLines and LinePlots.

Parameters:

  • BasePlot (_type_) – _description_

  • ABC (_type_) – _description_

abstract _create_tooltips(entries: dict, index: bool = True)#

Create tooltipis based on entries dictionary with keys: label for tooltip and values: column names.

entries = {

“m/z”: “mz” “Retention Time: “RT”

}

Will result in tooltips where label and value are separated by colon:

m/z: 100.5 Retention Time: 50.1

Parameters:

  • entries (dict) – Which data to put in tool tip and how display it with labels as keys and column names as values.

  • index (bool, optional) – Wether to show dataframe index in tooltip. Defaults to True.

Returns:

Tooltip text. Tooltip data.

abstract plot_x_axis_line(fig, line_color='#EEEEEE', line_width=1.5, opacity=1)#

plot line across x axis